PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352300.1
Common NameCsa_4G639900, LOC101204124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 248aa    MW: 27754.2 Da    PI: 7.2743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08159199954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Cucsa.352300.1 159 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 199
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-13155208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14155209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-6173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
VGDSFFFNPM ENDDLKSEDQ MEIMMMMQQM EKIPEFYNDF SPPSSDFSST TTDHPHCHLD  60
SSSSPPLFIN NNSNNNSNNP PYNFPQQSTV PFPGTSSSRW RNSGSCETES LQKQRSVAAM  120
REMIFRIAVM QPIHIDPEAV KPPKRRNVKI STDPQSVAAR HRRERISERI RILQRLVPGG  180
TKMDTASMLD EAIHYVKFLK TQVQSLERAA VSAGNRPITG VGAPSSVGFP LEMSTGSYIP  240
NHHQSQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141382.11e-178PREDICTED: transcription factor HEC2-like
SwissprotQ9SND44e-52HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0A0L0B31e-178A0A0A0L0B3_CUCSA; Uncharacterized protein
STRINGVIT_18s0001g10400.t012e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-43bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]